Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 125.

The full error message was:

Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (SRX9626017_SRR13191702)'

Caused by:
  Process `NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (SRX9626017_SRR13191702)` terminated with an error exit status (125)


Command executed:

  wget \
      -t 5 -nv -c -T 60 \
      -O SRX9626017_SRR13191702_1.fastq.gz \
      ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR13191702/SRR13191702_1.fastq.gz
  
  echo "89c5be920021a035084d8aeb74f32df7  SRX9626017_SRR13191702_1.fastq.gz" > SRX9626017_SRR13191702_1.fastq.gz.md5
  md5sum -c SRX9626017_SRR13191702_1.fastq.gz.md5
  
  wget \
      -t 5 -nv -c -T 60 \
      -O SRX9626017_SRR13191702_2.fastq.gz \
      ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR13191702/SRR13191702_2.fastq.gz
  
  echo "56271be38a80db78ef3bdfc5d9909b98  SRX9626017_SRR13191702_2.fastq.gz" > SRX9626017_SRR13191702_2.fastq.gz.md5
  md5sum -c SRX9626017_SRR13191702_2.fastq.gz.md5
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP":
      wget: $(echo $(wget --version | head -n 1 | sed 's/^GNU Wget //; s/ .*$//'))
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/biocontainers/wget:1.20.1' locally
  1.20.1: Pulling from biocontainers/wget
  docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of quay.io/biocontainers/wget:1.20.1 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/.
  See 'docker run --help'.

Work dir:
  /workspace/fetchngs/work/d9/d9fbfbff13acf3576969ba7b0629e2

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`